The role quests have differing dialogue based on whether or not you've already finished the MSQ but they mention people are still turning into beasts even though the source of the Final Days has been stopped.

It makes me wonder if that's going to come up in the MSQ and whether the fallout is going to naturally fade away with time or if we'll have to resort to a more direct method of purifying the tainted dynamis as a plot hook for future 6.x MSQs.