There are a lot of logical jumps in the idea. maybe we got to it just before it got to her. maybe it's aether-compass is completely bonkers from 5000 years of neglect and is no longer accurate. perhaps it decided you were looking at it funny. The machine is literally a prototype that was 5000 years past it's scrapping, so it could be any number of things. Machines tend to break, and prototypes are made to be broken.