Someone correct me if I am wrong here.
As far as I can see, the apps work by recieving info from the server itself and translating them to the players.
So unless the app itself actually sent questions to the server, the server have no idea what is going on. To the server, the client is at location xyz, all other mobs are at abc.
So unless SE plans to install spybots to detect unwanted stuff. I dont foresee anything happening.