I actually enjoy most of what they put in there, but the big bad points are:
1. Forked Tower is almost impossible to get into. The amount of people in an instance means you will always have those who are only there for grinding atma, getting achievements, new people in general, etc, which takes away from those who want to try it. And even if you get people on a Discord server to run it, people are having difficulty getting into the same instance.
2. Just look at gold farming on PF, don't need to say much more about that.
3. Because of how the CEs are, some of the phantom jobs feel pointless. I know that they are technically made for Forked Tower, but having them actually be useful for the rest of the area would have been nice.