If you think so, I either worded my posts poorly, or you misunderstood something.
You say "bad light". I say writing mistake, hypocrisy, or genuinely great setup for a moral relativist commentary. The fact that I argue, that something done by the heroes is morally questionable in principle isn't meant as criticism of characters. It might be if they move away from the current narrative, and move back to a black and white morality. But, until we keep rolling with the moral relativism theme, its actually a praise from me, if anything!
The only thing I am biased against really, is the story returning to a more simplistic morality after all this setup.
EDIT: to further break it down, what I am doing, is speculating how a character such as Hydaelyn, that so far has been characterized universally good, can fit into a narrative in which we are pushing, that good and evil is in the details, and in the eye of the beholder.