The current Halloween suggests that the WoL from the cgi scenes are the canon WoL. A previous Rising event or maybe a Stormblood flashback shows the WoL started in Ul'dah.

I'd always thought 1.0 WoL's canon timeline is starting in Ul'dah, to meet Minfilia, and then on 2.0, restarts in Gridania to meet the person responsible of rebooting the Grand Companies, and gets the leftover Limsa Lominsa intro in 5.0. Someone in an older thread thought WoL should start in Gridania in1.0 because of Yda, but they aren't even the same person and no one likes the person anyway