Class quests referencing MSQs

[Brightamethyst]

The dragoon quests are the only time you'll ever see that level of overlap between the class/job stories and the MSQ. Some minor things change based on classes you've leveled and other quests you've done (Alisaie's HW re-intro changes slightly depending on whether you've completed Binding Coil, a Stormblood cutscene changes slightly if you're a healer, a few Shadowbringers quests have an extra dialog option if you've done certain other quests, etc) but nothing else major like with Estinien.

I would however recommend doing the Warring Triad quest line before Shadowbringers. That'll give extra context to certain plot points, and is required for the role quest culmination quests.