What I do is aoe all the eggs since they don't have much HP. If I don't have an aoe, I just put a damage over time on each egg and kill one at a time. I'll let my squadron handle the boss.

The main issue with the the last boss IMO is the timing to have the squadron dodge bad breath if I'm not the tank. And even if I do disengage to dodge the bad breath, the boss has an instant Vine Probe cleave that does quite a bit of damage. So in most cases, I'll let the tank take the bad breath, but hopefully the healer that is not me doesn't take it too.