Okay first suggestion.
Make the CS in the last two Main Quest dungeouns skippable again. Being those two dungeouns are the 95% percent most likely to show up on Main Scenario it's increased the wait time to over 30 minutes in some cases. Either that or up the rewards I dont know maybe add in a token that you can use to get a peice of the four generals armor for glam or something and every 20 tokens gained can get a fantasia as a trade in .

Second suggestion
remove the diminishing returns for holy in PvE and make things stunnable again. You've made several abilities rather useless and whm are pretty much just healbots now. Lowblow and shield bash are pointless past level 50 it seems like everything is immune to getting stoppered up from their hardcast but the PCs.