Auto-allocation does not negate this issue. The only difference between manual and automatic point allocation is that with manual you actually have to think for yourself, at least until someone posts up the optimal cookie-cutter build for your role. In my opinion the only advantage automatic allocation has is that it's easier for the devs to balance.
If I recall correctly though, we're really getting the best of both worlds with 1.20. Automatic allocation will still exist but we'll get bonus points on top of that.