This happens as soon as the game launches from the launcher, every time.

In fullscreen mode at the proper resolution (2560x1440) the game centers so the top third of the game is off the top of the monitor.

In windowed mode, at all resolutions, the games centers so the top third of the window is off the top of the monitor and cannot be repositioned.

This patch was to support the game on OS X El Captain, which I am running, but has made the game unplayable.

iMac 27" (mid 2011)
All specs met or exceed minimum requirements of game
When I called into customer service he told me to put this in the bug support forums.