I'm having this issue as well. As another poster pointed out, I had my AF not on my person and redid the job quests, in turn giving me a second set of AF. One set is now just taking up inventory space and the other is sitting in the armoire. Hope SE fixes this I still have other jobs quests to redo. Yes, I'm aware if I just had my AF on my before doing the quests this wouldn't be a problem. This however is not a fix, this is a work around to something that is broken in the game.

Just my 2 Gil