Actually, I just found out what the problem is. It's on SE's end. I decided to try inputting my square enix password in the one time password box it kept forcing me to, and after entering the ******** appeared in the square enix password box instead of the one time box, so somehow when SE updated the launcher the text input box for square enix password is now located next to one time password, but the finished/entered text will appear in the proper box. -_-