Granted, you now have 200 inventory spaces but Items can no longer stack.
I wish for a Chocobo Dungeon.
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Granted, GL stack time extended to 15sec, however if for any reason you should lose GL it is replaced with a stack of Rough Thunder which auto-switches you to Fists of Stone and your skill speed is cut in half for 90sec.
I wish when you leveled up, you could assign points to Traits or Skills to evolve them.