Nope, the flashing red disappears on hate reset. I can just run past it to go back to crafting.
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Are we confusing "hate reset" with "new orders given?"
The only time you'll go from flashing red to green is if
A) New orders were given (but you will go back to flashing red immediately after a hate reset)
B) A DoH/DoL turned an item in and that mob targets them
C) WAR or NPC ARC gets hate on your mob