Game-pad and FFXiPadConfig not working correctly

[Nelyus]

A lot like Zhronne says, I tried 2 different controllers, an Xbox wired for PC & a Logitech F310, both reacts exactly the same way for FFXI & both works perfectly fine for FFXIV.
The problems I get are that no matter the settings I pick in FFXiPadConfig or FINAL FANTASY XI Config , they are different in the game. Also, any change to the inputs does not carry over in the game.
There clearly is a conflict problem with the config & the game.
The only setting I got close to work is E but then the "confirm/select" & "cancel" are inverted in the game. & still, there is no way to change any configurations that would carry into the game.
This problem occurred because I wanted to change my settings after the November 10 2015 update, because my settings from prior this update were just fine for playing after the update... until I tried to change something.
I played FFXI for 13 years & its a mess to deal with that, but because I am a Final Fantasy Tactics fan where O was accept & X cancel, I can try to deal with it but as soon as I come back to FFXIV I get so messed up again! );
Please fix this fast SE! Thank you. (=

[Szaltax]

Having identical issue, as described above. Bump for hope of attention and hopefully a quick fix

[YosemiteYogorockBlondelle]

Having identical issue, as described above. Bump for hope of attention and hopefully a quick fix

I don't play with a controller but I was wondering if this still occurs even with putting in the check box/command to leave the controller settings as always active while ffxi and pol viewer are not active, if this very same thing is still occurring with that set in place too??

[Seiki]

I would also like to report that I am having the same issue. I am using the European Steam version of FFXI for reference purposes. I have, as others have tried, to edit the three configurations to no avail.