Odd, I never had this problem when I used a PS3 remote, but I also used MotionJoy driver which has multiple driver configurations to choose from if the application doesn't recognize the analog shoulder trigger function of the remote (mainly due to the driver seeing it as a different function than a simple button press). You can see the difference also if you go to your game pad device settings and calibrate it.

Side story aside, they would have to update their configuration clients to recognize the new drivers used by these controllers. The only ones affected by this that I have seen is PS3 (when using driver that recognizes the analog nature of the remote) and Xbox 360 remotes used as game pads. Other brands don't seem to have this (specifically game pads made for PC use only).

Just to clarify what you are asking for: And update to the Client configuration tool that recognizes the Windows approved drivers for Xbox 360 and PS3 remotes which have Analog shoulder buttons.